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VisBOL: Web-Based Tools for Synthetic Biology Design Visualization

Lookup NU author(s): James Alastair McLaughlin McLaughlin, Dr Goksel Misirli, Dr Curtis Madsen, Professor Anil Wipat

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Abstract

VisBOL is a Web-based application that allows the rendering of genetic circuit designs, enabling synthetic biologists to visually convey designs in SBOL visual format. VisBOL designs can be exported to formats including PNG and SVG images to be embedded in Web pages, presentations and publications. The VisBOL tool enables the automated generation of visualizations from designs specified using the Synthetic Biology Open Language (SBOL) version 2.0, as well as a range of well-known bioinformatics formats including GenBank and Pigeoncad notation. VisBOL is provided both as a user accessible Web site and as an open-source (BSD) JavaScript library that can be used to embed diagrams within other content and software.

Publication metadata

Author(s): McLaughlin JA, Pocock M, Misirli G, Madsen C, Wipat A

Publication type: Article

Publication status: Published

Journal: ACS Synthetic Biology

Year: 2016

Volume: 5

Issue: 8

Pages: 874-876

Print publication date: 01/08/2016

Online publication date: 25/01/2016

Acceptance date: 01/01/1900

ISSN (print): 2161-5063

Publisher: Americal Chemical Society

URL: http://dx.doi.org/10.1021/acssynbio.5b00244

DOI: 10.1021/acssynbio.5b00244

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